Systems Biology publications (2002 - 2017)
38. Krishnan R, AS Nair, Pawan K Dhar. Computational study of HUB microRNA in human cardiac diseases.
Bioinformation 2017: 13, 17-20.
37. Kopal Joshi, Sukriti Goyal, Sonam Grover, Salma Jamal, Aditi Singh, Pawan Dhar and Abhinav Grover
Novel group-based QSAR and combinatorial design of CK-1δ inhibitors as neuroprotective agents.
BMC Bioinformatics 2016 (accepted)
36. Dhar PK. Converting Life into numbers. IJCB 0007:98-99, 2012
35. Namboodiri S, A Giuliani, PK Dhar (2012): Looking for a sequence based allostery definition: a statistical
journey at different resolution scales. J. Theor. Biol 304:211-8
34. Dhar PK. Virtual Cell: computing human brain. Nature India, April 2012
33. Dhar PK: Virtual cell: computing human skin. Nature India, Mar 2012
32. Dhar PK. Virtual Cell: Making a virtual human liver. Nature India, Feb 2012
31. Dhar PK. Virtual Cell: Making a virtual heart. Nature India, Jan 2012
30. Dhar PK. Virtual cell: Making tiny life forms. Nature India, Dec. 2011
29. Dhar PK. Virtual Cell: How to make one. Nature India, Nov 2011
28. Dhar PK. Virtual Cell. Nature India, Oct. 2011
27. Aswathi BL, AS Nair, A Sivasankaran, PK Dhar (2011): Identification of hub proteins from sequence.
Bioinformation 7,163-8
26. Tun K, Menghini M, Dhar PK, Tanaka H, Giuliani A (2011): Why so few drug targets: a mathematical
explanation. Current Computer-Aided Drug Design 7, 206-213
25. Dhar PK (2011): A periodic table for biology. Nature India, May 2011.
24. Dhar PK (2011): Finding new laws in biology. Nature India, Mar 2011
23. Krishnan R, Manjaly-Antony LA, PK Dhar (2010): Building momentum for systems and synthetic biology in
India. Sys. Synth. Biol. 4, 237-40.
22. Namboodiri S, Verma C, Dhar PK, Giuliani A, Nair AS (2010): Sequence signatures of allosteric proteins
towards rational design . Sys. Synth. Biol 2010: 4(4):271-80
21. Dhar PK, A.Giuliani. Laws in Biology: why so few ? Sys. Synth. Biol 2010: 4, 7-13
20. Rao R, K. Tun, Y. Makita, PK Dhar (2009): Amino-acid Residue Association models for large scale protein-
protein interaction prediction In Silico Biol 2009: 9, 0015
19. Tun K, Raghuraj Rao, L Swamedham, PK Dhar (2009): Rich can get poor – an evolutionary study of hub
proteins. Sys. Synth. Biol. 2009: 2, 75-82
18. Dhar PK (2007): The next step in biology: A periodic table? J. of Biosciences, 2007: 2, 1005-8
17. Dhar PK, R. Weiss (2006): Enabling the new biology of 21st century. Sys. Synth. Biol 1(1), 1-2
16. Tun K, PK Dhar, MC Palumbo, A. Giuliani (2006): Metabolic Pathways Variability and Sequence / Networks
Comparisons. BMC Bioinformatics 7, 24
15. Palumbo MC, A Colosimo, K Tun, PK Dhar, A Giuliani (2006): Networks Everywhere? Some general
implications of an emergent metaphor. Current Bioinformatics 1, 219-234
14. Mondry A, Z.Wang, P.K.Dhar (2005): Bone and the kidney: A systems biology approach to the molecular
mechanisms of renal osteodystrophy . Curr Mol Med 5, 489-496
13. Dhar PK (2005): Systems Biology is all noise. Current Science 88, 1022-23
12. Zhu H, Yinghui Wu, Sui Huang, Yan Sun, Pawan Dhar (2005): Cellular Automata With Object-Oriented
Features For Parallel Molecular Network Modeling. IEEE Transactions in NanoBioscience 2005: 4, 141-148
11. Dhar PK, Tan Chee Meng et al (2005): Grid Cellware - The first grid enabled Tool for Modeling And
Simulating cellular processes. Bioinformatics 21, 1284-7
10. S. Arjun, Pawan Dhar, Masaru Tomita (2005): E-Cell System : Basic concepts and applications
Kluwer Academic Publishers & Landes Biosciences. USA.
09. Zhu H, Sun Yan, G.Rajagopal, A.Mondry, Pawan Dhar (2004): Facilitating arrhythmia simulation: the method
of quantitative cellular automata modeling and parallel running. BioMedical Engineering OnLine 3, 29: 1-15
08. Zhu H, Peter Pang, Yan Sun and Pawan Dhar (2004): Asynchronous Adaptive Time Step In Quantitative
Cellular Automata Modeling. BMC Bioinformatics 5, 1-7
07. Dhar P (2004): Application of grid technology in systems biology: parameter estimation. IEEE
Proceedings, BioGrid, Japan
06. Rizwan A, Arun Krishnan, Pawan Dhar (2004): A Parallel Implementation of Gillespie's Direct Method.
Lecture Notes in Computer Science series 3037, 284-291
05. Dhar PK, Zhu Hao, Santosh Mishra (2004): Computational approach to systems biology: from fraction to
integration and beyond. IEEE Transactions on Nano-Bioscience 3, 144-152
04. Dhar PK, TC Meng,S Somani, Li Ye, A Sairam, M Chitre, Z Hao, K Sakharkar. Cellware – a new modeling and
simulation tool for Computational Systems Biology. Bioinformatics 2004: 20, 1319-1321 Covered by “The
Scientist” magazine, July 05, 2004
03. Meng TC, Sandeep Somani, Pawan Dhar (2004) Modeling and simulation of biological systems with
stochasticity. In Silico Biology 2004: 4, 0024.
02. Hao Z, Sui Huang, Pawan Dhar (2003): The next step in Systems Biology: Simulating temporo-spatial
dynamics of the molecular networks. BioEssays 26, 68-72.
01. Hashimoto K, Sae Seno, Pawan Dhar, M.Tomita (2002): Integrative modeling of gene expression and
metabolismin a cell. Artificial Life and Robotics 6: 99-107.